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Decadent chocolate cream cheese cupcakes (also known as black bottom cupcakes) are a fudgy, moist chocolate cake base filled with a chocolate chip cream cheese filling. Every bite is filled with chocolatey and creamy, tangy delight!

chocolate cream cheese cupcakes on a large plate next to a couple glasses of milk
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Celebrate with Me: Chocolate Cream Cheese Cupcakes

I made and posted this chocolate cream cheese cupcake recipe on my 25th birthday 12 years ago. I feel like that was a lifetime ago, and it honestly was. It had just been a year of starting the blog and I was recalling a specific black bottom cupcake recipe my friend had given me a few years back. These were it! They are very memorable because of the chocolate cake base that’s extremely tender and moist. When you take a bite of the cupcake, the center of it with the chocolate chip cream cheese just has this creamy, tangy bite that balances out the sweetness of the chocolate cupcake.

Chocolate cream cheese cupcakes are so simple to make and they’re the best of both worlds with chocolate and cream cheese all in one! The chocolate cake base is light, fluffy, and airy while the center where the cream cheese filling sits is dense and luscious. Trust me when I say everyone will love these black bottom cupcakes with cream cheese filling!

a chocolate cream cheese muffin is on a grey surface next to another cupcake

Recipe Tips and Variations

  • In cupcake and muffin making world, it is usually suggested to fill muffin cups 2/3 of the way full. In the case of black bottom cupcakes, you’ll want to make sure you fill it 1/3 of the way full and then add the cream cheese filling in the center. If you fill it too much, the chocolate batter will “swallow” the cream cheese filling and you won’t get that nice cream cheese topping that you typically see in black bottom cupcakes.
  • Use muffin/cupcake liners and lightly spray them with cooking oil just to make doubly sure that they’ll release easily. I don’t suggest baking these cupcakes without liners.
  • Use dark cocoa powder if you want a dark chocolate cake base. It will be slightly richer and not as sweet, but still so good.
  • Add a splash of espresso to the batter to really bring out the chocolate.

Storage Instructions

Since these cupcakes have a cream cheese filling, I would recommend allowing them to cool to room temperature then storing them in an airtight container in the refrigerator for up to 5 days. When you want to eat one, bring it to room temperature then enjoy!

5 from 3 votes

Chocolate Cream Cheese Cupcakes (Black Bottom)

Decadent chocolate cream cheese cupcakes (also known as black bottom cupcakes) are a fudgy, moist chocolate cake base filled with a chocolate chip cream cheese filling. Every bite is filled with chocolatey and creamy, tangy delight!
Prep Time: 15 minutes
Cook Time: 25 minutes
Total Time: 40 minutes
Servings: 24 cupcakes

Ingredients 

For the filling:

  • 8 ounces (227 g) plain cream cheese, softened
  • cup (67 g) granulated sugar
  • 1 egg
  • Pinch of salt
  • 1 cup (236 g) mini semisweet chocolate chips

For the cupcakes:

  • 3 cups (375 g) all purpose flour
  • 2 cups (400 g) sugar
  • cup (57 g) cocoa powder
  • 2 teaspoons baking soda
  • 1 teaspoon salt
  • 2 cups (473 ml) water
  • cup (158 ml) vegetable oil
  • 2 tablespoons white vinegar
  • 2 teaspoons vanilla extract

Instructions 

  • Preheat oven to 350 °F (177 °C). Prepare muffin pan by lining with muffin liners and lightly spraying the liners with cooking spray.
  • In the bowl of a stand mixer (or a bowl with a hand mixer), beat together the ingredients for the filling (cream cheese, sugar, egg, and salt) until light and fluffy. Gently fold in the chocolate chips with a spatula. Set aside.
    8 ounces (227 g) plain cream cheese, 1/3 cup (67 g) granulated sugar, 1 egg, Pinch of salt, 1 cup (236 g) mini semisweet chocolate chips
    cream cheese mixture and mini chocolate chips in a clear stand mixer bowl with spatula
  • In a large bowl, whisk together flour, sugar, cocoa powder, baking soda, and salt.
    3 cups (375 g) all purpose flour, 2 cups (400 g) sugar, 2/3 cup (57 g) cocoa powder, 2 teaspoons baking soda, 1 teaspoon salt
    flour, cocoa powder, and other dry ingredients in a clear bowl and wooden spoon
  • Make a well in the middle of the dry ingredients and add in the water, oil, vinegar, and vanilla extract. With a spatula or wooden spoon, mix together the dry with the wet ingredients until well combined, but not overmixed.
    2 cups (473 ml) water, 2/3 cup (158 ml) vegetable oil, 2 tablespoons white vinegar, 2 teaspoons vanilla extract
    vegetable oil is being poured into cocoa powder and flour mixture in a clear bowl with a wooden spoon
  • Fill muffin cups with ⅓ full of the chocolate cupcake batter then spoon 1 generous tablespoon of the cream cheese filling into the center of each cupcake. Repeat until all batter and filling have been used up.
    cream cheese filling is being added to chocolate cupcake batter in a muffin tin lined with muffin cups
  • Bake 20-25 minutes or until cake portion comes out clean with a toothpick. Let cupcakes cool in pan for 5 minutes before removing and transferring to wire rack to cool completely. They will sink a little and it's okay!
    baked chocolate cream cheese cupcakes
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Nutrition

Serving: 1cupcake (78 grams), Calories: 285kcal, Carbohydrates: 38g, Protein: 3g, Fat: 14g, Saturated Fat: 5g, Polyunsaturated Fat: 4g, Monounsaturated Fat: 4g, Trans Fat: 0.05g, Cholesterol: 17mg, Sodium: 223mg, Potassium: 125mg, Fiber: 2g, Sugar: 24g

This website provides approximate nutrition information for convenience and as a courtesy only. Nutrition information can vary for a variety of reasons. For the most precise nutritional data use your preferred nutrition calculator based on the actual ingredients you used in the recipe.

The default measuring system for this website is US Customary. Unit conversions are provided for convenience and as a courtesy only. While we strive to provide accurate unit conversions, please be aware that there may be some discrepancies.

Photographs by Meg McKeehan Photography

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83 Comments

  1. Bev Weidner says:

    Happy Birthday, sweet thang!!

    1. Julie says:

      Thanks, lover!

  2. Gina @ Running to the Kitchen says:

    First of all, Happy Birthday! I feel so old saying this but enjoy 25! It was one of my favorite years in my 20’s (says the girl with less than 3 months left in the decade)
    Secondly, OMG I want these! That second picture is gorgeous. Makes me want to jump into the screen!

    1. Julie says:

      Thank you, Gina! I sure hope 25 is a great year to remember. I have a feeling it is ;) I wish I could give you some of these cupcakes!

  3. Megan @Country Cleaver says:

    1) HAPPY BIRTHDAY, BEAUTIFUL!! I hope 25 is even better than 24.
    2) I need a stack of these cupcakes, STAT!! :)

    1. Julie says:

      1. THANKS MEGAN! <3
      2. Haha, I wish you could just come overrrr..we need to be neighbors :)

  4. Amber @ Amber's Confections says:

    Happy Birthday!!! Fabulous cupcakes!

    1. Julie says:

      Thank you, Amber!

  5. Tara @ Chip Chip Hooray says:

    Gaaah so much yum. These are a fantastic birthday treat!! I hope you have a wonderful day–eat one or three or twelve of these. ;)

    1. Julie says:

      Thanks, Tara — I could probably eat 12 of these…who’s counting? I’ll just shove them in my mouth and pretend I did nothing wrong. It’s my birthday, after all ;)

  6. amanda @ fake ginger says:

    HAPPY BIRTHDAY!! The cupcakes look delicious! I normally like my cupcakes loaded with frosting but I could get into these!

    1. Julie says:

      Thanks, Amanda!

  7. Elizabeth @ Chronic Venture says:

    HAPPY BIRTHDAY, JULIE!!!! These cupcakes look dreammyyyyy. I want to eat one right now with you. Cheers lovely!

    1. Julie says:

      Well, I still have probably 1.5 dozen so if you really do want one, you should swing by my place after work :) let me know! you know my #

  8. Samantha says:

    Happy Birthday, Lady! Cupcakes are a great bday gift to yourself.

    1. Julie says:

      Thanks! Eating does seem like a great gift ;)

  9. Kathryn says:

    These cupcakes look like a perfect way to celebrate your birthday ! I love that cream cheese filling – I’ve got to make some cupcakes for my friend’s engagement party in a couple of weeks and I’m so making these!

    1. Julie says:

      Please let me know if you make them! They’d be perfect for the engagement party :)

  10. Jordan Lynn (Ciao Cow) says:

    Happy Birthday! I stumbled across your blog when someone wished you a happy birthday on twitter, and I am so glad I did. These cupcakes look absolutely amazzzzing. :)

    1. Julie says:

      Thank you for the birthday wishes!! :)