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Decadent chocolate cream cheese cupcakes (also known as black bottom cupcakes) are a fudgy, moist chocolate cake base filled with a chocolate chip cream cheese filling. Every bite is filled with chocolatey and creamy, tangy delight!

chocolate cream cheese cupcakes on a large plate next to a couple glasses of milk
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Celebrate with Me: Chocolate Cream Cheese Cupcakes

I made and posted this chocolate cream cheese cupcake recipe on my 25th birthday 12 years ago. I feel like that was a lifetime ago, and it honestly was. It had just been a year of starting the blog and I was recalling a specific black bottom cupcake recipe my friend had given me a few years back. These were it! They are very memorable because of the chocolate cake base that’s extremely tender and moist. When you take a bite of the cupcake, the center of it with the chocolate chip cream cheese just has this creamy, tangy bite that balances out the sweetness of the chocolate cupcake.

Chocolate cream cheese cupcakes are so simple to make and they’re the best of both worlds with chocolate and cream cheese all in one! The chocolate cake base is light, fluffy, and airy while the center where the cream cheese filling sits is dense and luscious. Trust me when I say everyone will love these black bottom cupcakes with cream cheese filling!

a chocolate cream cheese muffin is on a grey surface next to another cupcake

Recipe Tips and Variations

  • In cupcake and muffin making world, it is usually suggested to fill muffin cups 2/3 of the way full. In the case of black bottom cupcakes, you’ll want to make sure you fill it 1/3 of the way full and then add the cream cheese filling in the center. If you fill it too much, the chocolate batter will “swallow” the cream cheese filling and you won’t get that nice cream cheese topping that you typically see in black bottom cupcakes.
  • Use muffin/cupcake liners and lightly spray them with cooking oil just to make doubly sure that they’ll release easily. I don’t suggest baking these cupcakes without liners.
  • Use dark cocoa powder if you want a dark chocolate cake base. It will be slightly richer and not as sweet, but still so good.
  • Add a splash of espresso to the batter to really bring out the chocolate.

Storage Instructions

Since these cupcakes have a cream cheese filling, I would recommend allowing them to cool to room temperature then storing them in an airtight container in the refrigerator for up to 5 days. When you want to eat one, bring it to room temperature then enjoy!

5 from 3 votes

Chocolate Cream Cheese Cupcakes (Black Bottom)

Decadent chocolate cream cheese cupcakes (also known as black bottom cupcakes) are a fudgy, moist chocolate cake base filled with a chocolate chip cream cheese filling. Every bite is filled with chocolatey and creamy, tangy delight!
Prep Time: 15 minutes
Cook Time: 25 minutes
Total Time: 40 minutes
Servings: 24 cupcakes

Ingredients 

For the filling:

  • 8 ounces (227 g) plain cream cheese, softened
  • cup (67 g) granulated sugar
  • 1 egg
  • Pinch of salt
  • 1 cup (236 g) mini semisweet chocolate chips

For the cupcakes:

  • 3 cups (375 g) all purpose flour
  • 2 cups (400 g) sugar
  • cup (57 g) cocoa powder
  • 2 teaspoons baking soda
  • 1 teaspoon salt
  • 2 cups (473 ml) water
  • cup (158 ml) vegetable oil
  • 2 tablespoons white vinegar
  • 2 teaspoons vanilla extract

Instructions 

  • Preheat oven to 350 °F (177 °C). Prepare muffin pan by lining with muffin liners and lightly spraying the liners with cooking spray.
  • In the bowl of a stand mixer (or a bowl with a hand mixer), beat together the ingredients for the filling (cream cheese, sugar, egg, and salt) until light and fluffy. Gently fold in the chocolate chips with a spatula. Set aside.
    8 ounces (227 g) plain cream cheese, 1/3 cup (67 g) granulated sugar, 1 egg, Pinch of salt, 1 cup (236 g) mini semisweet chocolate chips
    cream cheese mixture and mini chocolate chips in a clear stand mixer bowl with spatula
  • In a large bowl, whisk together flour, sugar, cocoa powder, baking soda, and salt.
    3 cups (375 g) all purpose flour, 2 cups (400 g) sugar, 2/3 cup (57 g) cocoa powder, 2 teaspoons baking soda, 1 teaspoon salt
    flour, cocoa powder, and other dry ingredients in a clear bowl and wooden spoon
  • Make a well in the middle of the dry ingredients and add in the water, oil, vinegar, and vanilla extract. With a spatula or wooden spoon, mix together the dry with the wet ingredients until well combined, but not overmixed.
    2 cups (473 ml) water, 2/3 cup (158 ml) vegetable oil, 2 tablespoons white vinegar, 2 teaspoons vanilla extract
    vegetable oil is being poured into cocoa powder and flour mixture in a clear bowl with a wooden spoon
  • Fill muffin cups with ⅓ full of the chocolate cupcake batter then spoon 1 generous tablespoon of the cream cheese filling into the center of each cupcake. Repeat until all batter and filling have been used up.
    cream cheese filling is being added to chocolate cupcake batter in a muffin tin lined with muffin cups
  • Bake 20-25 minutes or until cake portion comes out clean with a toothpick. Let cupcakes cool in pan for 5 minutes before removing and transferring to wire rack to cool completely. They will sink a little and it's okay!
    baked chocolate cream cheese cupcakes
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Nutrition

Serving: 1cupcake (78 grams), Calories: 285kcal, Carbohydrates: 38g, Protein: 3g, Fat: 14g, Saturated Fat: 5g, Polyunsaturated Fat: 4g, Monounsaturated Fat: 4g, Trans Fat: 0.05g, Cholesterol: 17mg, Sodium: 223mg, Potassium: 125mg, Fiber: 2g, Sugar: 24g

This website provides approximate nutrition information for convenience and as a courtesy only. Nutrition information can vary for a variety of reasons. For the most precise nutritional data use your preferred nutrition calculator based on the actual ingredients you used in the recipe.

The default measuring system for this website is US Customary. Unit conversions are provided for convenience and as a courtesy only. While we strive to provide accurate unit conversions, please be aware that there may be some discrepancies.

Photographs by Meg McKeehan Photography

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83 Comments

  1. vicky says:

    When do i add mini chocolate chip?

    1. Julie says:

      In step 2 it says after you beat the ingredients together to gently fold in the chocolate chips.

  2. Chichi says:

    the recipe has no eggs? thanks :)

    1. Julie says:

      It has 1 egg. Please re-read the recipe above..it is in there!

      1. Chichi says:

        OH sorry thank you! :)

  3. Chung-Ah | Damn Delicious says:

    I was inspired by your cupcakes so for this week’s Muffin Monday, I added the cheesecake filling right into them. Thanks for the inspiration!

  4. DessertForTwo says:

    Happy Birthday, sweetness! I didn’t know you & The LIttle Kitchen had the same bday! Fun!! :)

  5. Betty says:

    I wouldn’t want to disappoint you since it’s your birthday and all, so I guess I’ll just have to make these. :) Hope you had a happy day!

  6. Leah | So, How's It Taste? says:

    Happy (day late) Birthday! Glad your dessert turned out better than mine, lol! So many blogger birthdays this time of year! Us Aquarians know food! :)

  7. Jordan says:

    and happy birthday too! :)

  8. Jordan says:

    I am SO EXCITED!! My mom used to make these all the time when I was younger, and they are my favorite cupcake. She said she couldn’t remember where she got the recipe or how she made them though. I tried one I found on the internet a while ago, but they didn’t come out quite right. I can’t wait to try these! :) Thanks!

  9. Lauren at Keep It Sweet says:

    I want 10 of these cupcakes! Hope you had a great day yesterday:-)